Stanislav Angelov

You can contact me at: 267 825 0209

Journal Publications

• The Network as a Storage Device: Dynamic Routing with Bounded Buffers
  (with Sanjeev Khanna and Keshav Kunal)
  Algorithmica, To appear.
  
  
• On the Complexity of Graph Self-Assembly in Accretive Systems
  (with Sanjeev Khanna and Mirkó Visontai)
  Natural Computing (DNA'06 Special Issue), To appear.
  
  
• Efficient Enumeration of Phylogenetically Informative Substrings
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim)
  Journal of Computational Biology (RECOMB'06 Special Issue), 2007, 14(6): 701-723
  
  

Publications

• Robust Self-Assembly of Graphs
  (with Sanjeev Khanna and Mirkó Visontai)
  14th International Meeting on DNA Computing (DNA), 2008. To appear
  Abstract | Slides
  
  
• Sorting and Selection with Random Costs
  (with Keshav Kunal and Andrew McGregor)
  8th Latin American Theoretical Informatics (LATIN), 2008. To appear
  Abstract | Slides
  
  
• On the Complexity of Graph Self-Assembly in Accretive Systems
  (with Sanjeev Khanna and Mirkó Visontai)
  12th International Meeting on DNA Computing (DNA), 2006.
  Full version | Abstract | Slides presented by Mirkó Visontai (Mirkó was also awarded the Excellent Student Paper Prize)
  
  
• Efficient Enumeration of Phylogenetically Informative Substrings
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim)
  10th Annual International Conference on Research in Computational Molecular Biology (RECOMB), 2006.
  Full version | Abstract | Project Homepage | Slides
  
  
• Weighted Isotonic Regression under the L1 Norm
  (with Boulos Harb, Sampath Kannan, and Li-San Wang)
  17th Annual Symposium on Discrete Algorithms (SODA), 2006.
  Abstract | Supplementary Information | Slides
  
  
• Composite Pattern Discovery for PCR Application
  (with Shunsuke Inenaga)
  12th Symposium on String Processing and Information Retrieval (SPIRE), 2005.
  Abstract | Supplementary Information | Slides presented by Shunsuke Inenaga
  
  
• The Network as a Storage Device: Dynamic Routing with Bounded Buffers
  (with Sanjeev Khanna and Keshav Kunal)
  8th International Workshop on Approximation Algorithms for Combinatorial Optimization Problems (APPROX), 2005.
  Full version | Abstract | Slides presented by Keshav Kunal
  
  
• Genome Identification and Classification by Short Oligo Arrays
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, and Li-San Wang)
  4th Workshop on Algorithms in Bioinformatics (WABI), 2004.
  Abstract | Project Homepage | Slides
  
  
• ATDD: Algorithmic Tool for Domain Discovery in Protein Sequences
  (with Sanjeev Khanna, Fernando Pereira, and Li Li)
  4th Workshop on Algorithms in Bioinformatics (WABI), 2004.
  Abstract | Supplementary Information | Slides
  
  
• Interactive, Immersive Visualization for Indoor Environments: Use of Augmented Reality, Human-Computer Interaction and Building Simulation
  (with Ali Malkawi, Ravi Srinivasan, Benjamin Jackson, Yun Yi, and Kin Chan)
  IEEE 8th International Conference on Information Visualisation (IV), 2004.
  Abstract
  
  

Presentations and Posters

• Efficient Enumeration of Phylogenetically Informative Substrings poster (revision 2),
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim)
  CIPRES all hands meeting, 2006.
  
  
• High-throughput Phylogeny Placement poster (revision 1)
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim)
  UPenn Graduate Research Symposium, 2005.
  
  
• High-throughput Phylogeny Placement poster presented by Boulos Harb
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim)
  CIPRES all hands meeting, 2005.
  
  
• Automatic Domain Discovery from Protein Sequences, presentation
  (with Sanjeev Khanna, Fernando Pereira, and Li Li)
  Sequence Modeling Group meeting, UPenn, 2003.
  
  
• Automatic Domain Discovery from Protein Sequences, poster
  (with Sanjeev Khanna, Fernando Pereira, and Li Li)
  Greater Philadelphia Bioinformatics Alliance Retreat, 2003.
  
  
• Phylogeny by Hybridization, project presented by Boulos Harb.
  (with Boulos Harb, Sampath Kannan, Sanjeev Khanna, Junhyong Kim, and Li-San Wang)
  Greater Philadelphia Bioinformatics Alliance Retreat, 2003.
  
  

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